Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

PM4 and BP3 rules for VCEPs #177

Merged
merged 5 commits into from
Aug 28, 2024
Merged

PM4 and BP3 rules for VCEPs #177

merged 5 commits into from
Aug 28, 2024

Conversation

gromdimon
Copy link
Collaborator

Issue:

Description:

  • Implemented
  • Tested

@gromdimon gromdimon linked an issue Aug 28, 2024 that may be closed by this pull request
Implement PM4 and BP3 VCEPs #176
Closed
@codecov Codecov
Copy link

codecov bot commented Aug 28, 2024 •
edited
Loading

Codecov Report

Attention: Patch coverage is 83.98058% with 33 lines in your changes missing coverage. Please review.

Project coverage is 86.06%. Comparing base (116f0e4) to head (44c55e8).
Report is 1 commits behind head on main.

Files Patch % Lines
src/vcep/rett_angelman.py 71.73% 13 Missing ⚠️
src/vcep/vhl.py 78.26% 10 Missing ⚠️
src/vcep/pten.py 80.00% 5 Missing ⚠️
src/vcep/hbopc.py 76.92% 3 Missing ⚠️
src/criteria/auto_pm4_bp3.py 83.33% 1 Missing ⚠️
src/vcep/pku.py 50.00% 1 Missing ⚠️
Additional details and impacted files 
@@            Coverage Diff             @@
##             main     #177      +/-   ##
==========================================
- Coverage   86.21%   86.06%   -0.16%     
==========================================
  Files          63       63              
  Lines        3490     3689     +199     
==========================================
+ Hits         3009     3175     +166     
- Misses        481      514      +33
Files Coverage Δ
src/defs/auto_acmg.py 99.59% <100.00%> (+0.01%) ⬆️
src/vcep/__init__.py 100.00% <100.00%> (ø)
src/vcep/acadvl.py 100.00% <100.00%> (ø)
src/vcep/brain_malformations.py 100.00% <100.00%> (ø)
src/vcep/cardiomyopathy.py 100.00% <100.00%> (ø)
src/vcep/cdh1.py 100.00% <100.00%> (ø)
src/vcep/cerebral_creatine_deficiency_syndromes.py 100.00% <100.00%> (ø)
src/vcep/coagulation_factor_deficiency.py 97.91% <100.00%> (+0.09%) ⬆️
src/vcep/congenital_myopathies.py 100.00% <100.00%> (ø)
src/vcep/dicer1.py 100.00% <100.00%> (ø)
... and 20 more

@gromdimon gromdimon merged commit e371aea into main Aug 28, 2024
4 of 5 checks passed
@gromdimon gromdimon deleted the 176-implement-pm4-and-bp3-vceps branch August 28, 2024 11:06
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Implement PM4 and BP3 VCEPs
1 participant
@gromdimon